Demo Taylor and Francis template

Authors
Affiliations

Michael J Mahoney

State University of New York College of Environmental Science and Forestry

Another One

State University of New York College of Environmental Science and Forestry

Someone Else

State University of New York College of Environmental Science and Forestry

Abstract

This document is only a demo explaining how to use the template.

Keywords

template, demo

1 Introduction

This is an example of how to use this template to render journal articles. This template is inspired by the Taylor and Francis rticles template for rmarkdown, repurposed for the Quarto publishing system.

This quarto extension format supports PDF and HTML outputs. This template is primarily focused on generating acceptable \(\LaTeX\) outputs from Quarto, but renders an acceptable HTML output using the standard Quarto options.

2 Quarto

Quarto enables you to weave together content and executable code into a finished document. To learn more about Quarto see https://quarto.org.

3 Running Code

When you click the Render button a document will be generated that includes both content and the output of embedded code. You can embed code like this:

[1] 2

This format hide chunks by default, but you can set echo option to true locally in the chunk:

# install.packages("broom")
# install.packages("kableExtra")
data("quine", package = "MASS")
m_pois <- glm(Days ~ (Eth + Sex + Age + Lrn)^2, data = quine, family = poisson)
kableExtra::kable_styling(
  kableExtra::kbl(broom::tidy(m_pois))
)
Table 1: A table.
term estimate std.error statistic p.value
(Intercept) 2.9324591 0.0982638 29.8427305 0.0000000
EthN -0.1739938 0.1213351 -1.4339937 0.1515741
SexM -0.7145197 0.1222943 -5.8426235 0.0000000
AgeF1 -0.0426993 0.1269111 -0.3364507 0.7365310
AgeF2 -0.0863239 0.1616403 -0.5340495 0.5933073
AgeF3 -0.1528978 0.1189753 -1.2851227 0.1987494
LrnSL 0.2160818 0.1455811 1.4842716 0.1377369
EthN:SexM 0.4390243 0.0920790 4.7679077 0.0000019
EthN:AgeF1 -0.9288934 0.1465738 -6.3373786 0.0000000
EthN:AgeF2 -1.3339773 0.1350383 -9.8785113 0.0000000
EthN:AgeF3 -0.1124246 0.1347842 -0.8341080 0.4042202
EthN:LrnSL 0.2641524 0.1137843 2.3215200 0.0202588
SexM:AgeF1 -0.0556536 0.1630311 -0.3413682 0.7328264
SexM:AgeF2 1.0994244 0.1528125 7.1945973 0.0000000
SexM:AgeF3 1.1594892 0.1385899 8.3663319 0.0000000
SexM:LrnSL 0.0414270 0.1371756 0.3019998 0.7626522
AgeF1:LrnSL -0.1301879 0.1568800 -0.8298561 0.4066201
AgeF2:LrnSL 0.3734020 0.1456293 2.5640585 0.0103456
AgeF3:LrnSL NA NA NA NA

4 Markdown Basics

This section of the template is adapted from Quarto’s documentation on Markdown basics.

4.1 Text Formatting

Markdown Syntax Output 
*italics* and **bold**
 italics and bold 
superscript^2^ / subscript~2~
 superscript2 / subscript2 
~~strikethrough~~
 strikethrough 
`verbatim code`
 verbatim code

4.2 Headings

Markdown Syntax Output 
# Header 1

5 Header 1

 
## Header 2

5.1 Header 2

 
### Header 3

5.1.1 Header 3

5.2 Equations

Use $ delimiters for inline math and $$ delimiters for display math. For example:

Markdown Syntax Output 
inline math: $E = mc^{2}$
 inline math: \(E=mc^{2}\) 
display math:

$$E = mc^{2}$$
 display math:
\[E = mc^{2}\]

If assigned an ID, display math equations will be automatically numbered:

\[ \frac{\partial \mathrm C}{ \partial \mathrm t } + \frac{1}{2}\sigma^{2} \mathrm S^{2} \frac{\partial^{2} \mathrm C}{\partial \mathrm C^2} + \mathrm r \mathrm S \frac{\partial \mathrm C}{\partial \mathrm S}\ = \mathrm r \mathrm C \tag{1}\]

5.3 Other Blocks

Markdown Syntax Output 
> Blockquote

Blockquote

 
| Line Block
|   Spaces and newlines
|   are preserved
Line Block
   Spaces and newlines
   are preserved

5.4 Cross-references

Figure 1: A sunflower
Markdown Format Output 
@fig-sunflower is pretty.
 Figure 1 is pretty. 
@tbl-glm was created from code.
 Table 1 was created from code. 
@sec-crf is this section.
 Section 5.4 is this section. 
@eq-black-scholes is above.
 Equation 1 is above.

See the Quarto documentation on cross-references for more.

6 Citations

This section of the template is adapted from the Quarto citation documentation.

Quarto supports bibliography files in a wide variety of formats including BibTeX and CSL. Add a bibliography to your document using the bibliography YAML metadata field. For example:

---
title: "My Document"
bibliography: references.bib
---

See the Pandoc Citations documentation for additional information on bibliography formats.

7 Citations

This section of the template is adapted from the Quarto citation documentation.

Quarto supports bibliography files in a wide variety of formats including BibTeX and CSL. Add a bibliography to your document using the bibliography YAML metadata field. For example:

---
title: "My Document"
bibliography: references.bib
---

See the Pandoc Citations documentation for additional information on bibliography formats.

7.1 Citation Syntax

Quarto uses the standard Pandoc markdown representation for citations. Here are some examples:

Markdown Format Output 
Blah Blah [see @knuth1984, pp. 33-35;
also @wickham2015, chap. 1]
 Blah Blah (see Knuth 1984, 33–35; also Wickham 2015, chap. 1) 
Blah Blah [@knuth1984, pp. 33-35,
38-39 and passim]
 Blah Blah (Knuth 1984, 33–35, 38–39 and passim) 
Blah Blah [@wickham2015; @knuth1984].
 Blah Blah (Wickham 2015; Knuth 1984). 
Wickham says blah [-@wickham2015]
 Wickham says blah (2015)

You can also write in-text citations, as follows:

Markdown Format Output 
@knuth1984 says blah.
 Knuth (1984) says blah. 
@knuth1984 [p. 33] says blah.
 Knuth (1984, 33) says blah.

See the Pandoc Citations documentation for additional information on citation syntax.

To provide a custom citation stylesheet, provide a path to a CSL file using the csl metadata field in your document, for example:

---
title: "My Document"
bibliography: references.bib
csl: nature.csl
---

References

Knuth, Donald E. 1984. “Literate Programming.” The Computer Journal 27 (2). British Computer Society: 97–111.
Wickham, Hadley. 2015. R Packages. 1st ed. O’Reilly Media, Inc.